STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS9A_1010Putative dioxygenase. (387 aa)    
Predicted Functional Partners:
AS9A_0968
Putative dehydrogenase; Belongs to the GcvT family.
 
  
 0.803
AS9A_1005
Dimethylglycine oxidase; Belongs to the GcvT family.
 
  
 0.799
AS9A_1011
Glycine betaine transport integral membrane protein BetP; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.797
AS9A_1008
Possible ferredoxin.
 
  
 0.708
soxG
Sarcosine oxidase gamma subunit.
 
  
 0.661
soxA
Sarcosine oxidase alpha subunit.
 
  
 0.661
soxD
Sarcosine oxidase delta subunit.
 
    0.640
soxB
Sarcosine oxidase beta subunit.
 
  
 0.600
nirD
Putative 2Fe-2S rieske nitrite reductase small subunit.
 
  
 0.550
AS9A_1009
Transcriptional regulator.
 
   
 0.535
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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