AS9A_1716 protein (Hoyosella subflava) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AS9A_1716

Extracellular solute-binding protein family 1. (437 aa)

Predicted Functional Partners:

AS9A_1718

0.946

AS9A_1717

0.936

AS9A_1719

0.885

AS9A_1720

0.761

AS9A_1715

0.694

AS9A_0951

0.667

AS9A_4554

0.667

AS9A_0950

0.621

AS9A_2495

0.621

AS9A_4395

0.621

Your Current Organism:

Hoyosella subflava

NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AS9A_0950	AS9A_0951	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.988
AS9A_0950	AS9A_1716	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 1.	0.621
AS9A_0950	AS9A_1717	Binding-protein-dependent transport systems inner membrane component.	ABC superfamily ATP binding cassette transporter, membrane protein.	0.888
AS9A_0950	AS9A_1720	Binding-protein-dependent transport systems inner membrane component.	ATPase component of ABC-type sugar transport system; Belongs to the ABC transporter superfamily.	0.867
AS9A_0950	AS9A_4554	Binding-protein-dependent transport systems inner membrane component.	Sugar ABC superfamily ATP binding cassette transporter, permease protein.	0.949
AS9A_0951	AS9A_0950	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.988
AS9A_0951	AS9A_1716	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 1.	0.667
AS9A_0951	AS9A_1718	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.901
AS9A_0951	AS9A_1720	Binding-protein-dependent transport systems inner membrane component.	ATPase component of ABC-type sugar transport system; Belongs to the ABC transporter superfamily.	0.855
AS9A_0951	AS9A_2495	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.950
AS9A_0951	AS9A_4395	Binding-protein-dependent transport systems inner membrane component.	Putative ABC transporter permease protein.	0.906
AS9A_1715	AS9A_1716	Transcriptional regulator, LacI family.	Extracellular solute-binding protein family 1.	0.694
AS9A_1715	AS9A_1717	Transcriptional regulator, LacI family.	ABC superfamily ATP binding cassette transporter, membrane protein.	0.522
AS9A_1715	AS9A_1718	Transcriptional regulator, LacI family.	Binding-protein-dependent transport systems inner membrane component.	0.531
AS9A_1715	AS9A_1719	Transcriptional regulator, LacI family.	Glycosyl hydrolase family 32 domain protein.	0.624
AS9A_1715	AS9A_1720	Transcriptional regulator, LacI family.	ATPase component of ABC-type sugar transport system; Belongs to the ABC transporter superfamily.	0.432
AS9A_1716	AS9A_0950	Extracellular solute-binding protein family 1.	Binding-protein-dependent transport systems inner membrane component.	0.621
AS9A_1716	AS9A_0951	Extracellular solute-binding protein family 1.	Binding-protein-dependent transport systems inner membrane component.	0.667
AS9A_1716	AS9A_1715	Extracellular solute-binding protein family 1.	Transcriptional regulator, LacI family.	0.694
AS9A_1716	AS9A_1717	Extracellular solute-binding protein family 1.	ABC superfamily ATP binding cassette transporter, membrane protein.	0.936