STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJ2Acetyltransferase, GNAT family. (186 aa)    
Predicted Functional Partners:
AS9A_2030
Secreted protein.
  
    0.783
AS9A_2029
Hypothetical protein.
     
 0.515
AS9A_4425
Non-ribosomal peptide synthetase.
 
  
 0.511
AS9A_2032
Membrane-bound metal-dependent hydrolase.
       0.485
AS9A_0133
L-ornithine 5-monooxygenase.
  
  
 0.483
cobL
Precorrin-6Y C5,15-methyltransferase.
       0.459
AS9A_2025
Putative oxidoreductase.
 
     0.448
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.428
AS9A_2033
Copper-exporting ATPase.
     
 0.415
cobM
Precorrin-4 C(11)-methyltransferase.
       0.413
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.