Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AS9A_0386 | AS9A_2290 | AS9A_0386 | AS9A_2290 | Hypothetical protein. | ThiJ/PfpI domain protein. | 0.546 |
AS9A_0386 | AS9A_2291 | AS9A_0386 | AS9A_2291 | Hypothetical protein. | AraC family transcriptional regulator. | 0.463 |
AS9A_0386 | menD | AS9A_0386 | AS9A_0385 | Hypothetical protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.820 |
AS9A_0464 | AS9A_2290 | AS9A_0464 | AS9A_2290 | Alpha/beta hydrolase fold protein. | ThiJ/PfpI domain protein. | 0.547 |
AS9A_0464 | AS9A_2291 | AS9A_0464 | AS9A_2291 | Alpha/beta hydrolase fold protein. | AraC family transcriptional regulator. | 0.544 |
AS9A_0464 | menD | AS9A_0464 | AS9A_0385 | Alpha/beta hydrolase fold protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.535 |
AS9A_2290 | AS9A_0386 | AS9A_2290 | AS9A_0386 | ThiJ/PfpI domain protein. | Hypothetical protein. | 0.546 |
AS9A_2290 | AS9A_0464 | AS9A_2290 | AS9A_0464 | ThiJ/PfpI domain protein. | Alpha/beta hydrolase fold protein. | 0.547 |
AS9A_2290 | AS9A_2291 | AS9A_2290 | AS9A_2291 | ThiJ/PfpI domain protein. | AraC family transcriptional regulator. | 0.910 |
AS9A_2290 | AS9A_2292 | AS9A_2290 | AS9A_2292 | ThiJ/PfpI domain protein. | Amine oxidase. | 0.554 |
AS9A_2290 | lexA | AS9A_2290 | AS9A_1727 | ThiJ/PfpI domain protein. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.454 |
AS9A_2290 | menD | AS9A_2290 | AS9A_0385 | ThiJ/PfpI domain protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.546 |
AS9A_2291 | AS9A_0386 | AS9A_2291 | AS9A_0386 | AraC family transcriptional regulator. | Hypothetical protein. | 0.463 |
AS9A_2291 | AS9A_0464 | AS9A_2291 | AS9A_0464 | AraC family transcriptional regulator. | Alpha/beta hydrolase fold protein. | 0.544 |
AS9A_2291 | AS9A_2290 | AS9A_2291 | AS9A_2290 | AraC family transcriptional regulator. | ThiJ/PfpI domain protein. | 0.910 |
AS9A_2291 | AS9A_2292 | AS9A_2291 | AS9A_2292 | AraC family transcriptional regulator. | Amine oxidase. | 0.554 |
AS9A_2291 | lexA | AS9A_2291 | AS9A_1727 | AraC family transcriptional regulator. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.450 |
AS9A_2291 | menD | AS9A_2291 | AS9A_0385 | AraC family transcriptional regulator. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.502 |
AS9A_2292 | AS9A_2290 | AS9A_2292 | AS9A_2290 | Amine oxidase. | ThiJ/PfpI domain protein. | 0.554 |
AS9A_2292 | AS9A_2291 | AS9A_2292 | AS9A_2291 | Amine oxidase. | AraC family transcriptional regulator. | 0.554 |
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