STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS9A_2370Ferric uptake regulator; Belongs to the Fur family. (143 aa)    
Predicted Functional Partners:
AS9A_1210
Putative Fur family transcriptional regulator; Belongs to the Fur family.
  
   
 0.612
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.609
AS9A_1902
DNA-binding protein.
  
    0.563
AS9A_1753
Fe(2+)-dependent transcriptional regulator.
  
  
 0.530
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.514
AS9A_2369
PadR-like family transcriptional regulator.
       0.512
sigB
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.435
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.435
AS9A_0931
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.425
AS9A_0246
Catalase; Belongs to the catalase family.
    
 0.424
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.