STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS9A_3008Putative oxidoreductase. (425 aa)    
Predicted Functional Partners:
hadL
Putative haloalkanoic acid dehalogenase.
 
  
 0.930
soxA
Sarcosine oxidase alpha subunit.
 
 
 0.921
AS9A_2244
Putative hydrolase.
 
  
 0.802
AS9A_3007
Putative aldehyde dehydrogenase.
  
  
 0.743
AS9A_3005
Putative D-isomer specific 2-hydroxyacid dehydrogenase.
     
 0.734
AS9A_3006
Tartrate dehydrogenase.
     
 0.731
aspA
Aspartate ammonia-lyase.
  
    0.576
soxD
Sarcosine oxidase delta subunit.
 
 
 0.539
soxG
Sarcosine oxidase gamma subunit.
 
 
 0.457
fadB
Fatty oxidation complex alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.427
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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