STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabT24-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (413 aa)    
Predicted Functional Partners:
AS9A_2484
Putative glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.935
AS9A_0791
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.929
AS9A_0993
Aldehyde dehydrogenase.
 
 0.929
AS9A_2020
Aldehyde dehydrogenase (NAD+).
 
 0.929
AS9A_2267
Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.929
mmsA
Methylmalonate-semialdehyde dehydrogenase.
 
 0.929
AS9A_3973
Methylmalonate-semialdehyde dehydrogenase.
 
 0.929
AS9A_2236
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.926
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.904
panD
Aspartate 1-decarboxylase alpha chain; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.904
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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