STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS9A_4349Citrate (Pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family. (276 aa)    
Predicted Functional Partners:
AS9A_4350
Hypothetical protein.
 
  
 0.988
AS9A_4351
Acyl-CoA dehydrogenase.
 
  
 0.988
accA
Acetyl/propionyl-CoA carboxylase.
  
  
 0.948
AS9A_1359
Citrate (Pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
0.935
AS9A_4361
Putative acyl-CoA carboxylase beta chain.
  
  
 0.923
AS9A_2768
Putative succinyl-CoA--3-ketoacid CoA-transferase alpha subunit.
     
 0.834
AS9A_4348
Putative acyl-CoA synthetase.
     
 0.816
egtD
Hypothetical protein; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.808
AS9A_1919
Hypothetical protein.
      
 0.791
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
     
 0.788
Your Current Organism:
Hoyosella subflava
NCBI taxonomy Id: 443218
Other names: Amycolicicoccus subflavus DQS3-9A1, H. subflava DQS3-9A1, Hoyosella subflava DQS3-9A1
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