CPSG_05561 protein (Coccidioides posadasii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPSG_05561

Protein YIP. (316 aa)

Predicted Functional Partners:

CPSG_08506

0.965

CPSG_09244

0.831

CPSG_05560

0.745

CPSG_05691

0.628

CPSG_04227

0.482

CPSG_01016

0.437

CPSG_09231

0.437

CPSG_08799

0.433

CPSG_07177

0.429

CPSG_01059

0.422

Your Current Organism:

Coccidioides posadasii

NCBI taxonomy Id: 443226
Other names: C. posadasii str. Silveira, Coccidioides posadasii str. Silveira

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSG_01016	CPSG_01059	E9CUD5	E9CUN2	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.462
CPSG_01016	CPSG_04227	E9CUD5	E9D3N8	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Sorting nexin 3.	0.945
CPSG_01016	CPSG_05561	E9CUD5	E9D6Q2	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Protein YIP.	0.437
CPSG_01016	CPSG_09231	E9CUD5	E9DHD2	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Vacuolar targeting protein Atg24.	0.614
CPSG_01059	CPSG_01016	E9CUN2	E9CUD5	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.462
CPSG_01059	CPSG_04227	E9CUN2	E9D3N8	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Sorting nexin 3.	0.648
CPSG_01059	CPSG_05560	E9CUN2	E9D6Q1	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	RanBD1 domain-containing protein.	0.401
CPSG_01059	CPSG_05561	E9CUN2	E9D6Q2	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Protein YIP.	0.422
CPSG_01059	CPSG_07177	E9CUN2	E9DBH5	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.920
CPSG_01059	CPSG_09231	E9CUN2	E9DHD2	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Vacuolar targeting protein Atg24.	0.462
CPSG_04227	CPSG_01016	E9D3N8	E9CUD5	Sorting nexin 3.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.945
CPSG_04227	CPSG_01059	E9D3N8	E9CUN2	Sorting nexin 3.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.648
CPSG_04227	CPSG_05561	E9D3N8	E9D6Q2	Sorting nexin 3.	Protein YIP.	0.482
CPSG_04227	CPSG_07177	E9D3N8	E9DBH5	Sorting nexin 3.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.657
CPSG_04227	CPSG_09231	E9D3N8	E9DHD2	Sorting nexin 3.	Vacuolar targeting protein Atg24.	0.420
CPSG_05560	CPSG_01059	E9D6Q1	E9CUN2	RanBD1 domain-containing protein.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.401
CPSG_05560	CPSG_05561	E9D6Q1	E9D6Q2	RanBD1 domain-containing protein.	Protein YIP.	0.745
CPSG_05561	CPSG_01016	E9D6Q2	E9CUD5	Protein YIP.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.437
CPSG_05561	CPSG_01059	E9D6Q2	E9CUN2	Protein YIP.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.422
CPSG_05561	CPSG_04227	E9D6Q2	E9D3N8	Protein YIP.	Sorting nexin 3.	0.482