STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEX85520.1PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein. (440 aa)    
Predicted Functional Partners:
AEX84788.1
Hypothetical protein.
  
     0.722
AEX84776.1
PFAM: Phage major capsid protein E.
  
     0.708
AEX85521.1
FAD-dependent dehydrogenase; PFAM: FAD dependent oxidoreductase.
       0.703
AEX84784.1
PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region.
  
     0.701
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.699
AEX85693.1
PFAM: Major Facilitator Superfamily.
  
     0.682
AEX85698.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain.
  
     0.660
AEX85535.1
Putative membrane protein; PFAM: EamA-like transporter family.
  
     0.644
AEX86214.1
PFAM: ABC-type uncharacterized transport system.
  
     0.539
AEX85096.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain.
  
 
   0.534
Your Current Organism:
Marinitoga piezophila
NCBI taxonomy Id: 443254
Other names: M. piezophila KA3, Marinitoga piezophila KA3, Marinitoga piezophila str. KA3, Marinitoga piezophila strain KA3, Thermotogales sp. KA3
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