STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKB12788.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
KKB12787.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.754
KKB10787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.540
gatB
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.529
KKB07126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.488
KKB12790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
KKB08552.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.450
Your Current Organism:
Devosia geojensis
NCBI taxonomy Id: 443610
Other names: D. geojensis, DSM 19414, Devosia geojensis Ryu et al. 2008, Devosia sp. BD-c194, KCTC 22082, strain BD-c194
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.