STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKB12396.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)    
Predicted Functional Partners:
KKB13616.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.607
KKB12397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
KKB08424.1
Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.506
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 
 0.481
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.481
lldD
Lactate dehydrogenase; Flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.474
KKB12787.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.460
KKB10963.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.458
KKB10994.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.449
KKB12398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.441
Your Current Organism:
Devosia geojensis
NCBI taxonomy Id: 443610
Other names: D. geojensis, DSM 19414, Devosia geojensis Ryu et al. 2008, Devosia sp. BD-c194, KCTC 22082, strain BD-c194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.