Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (286 aa)    
Predicted Functional Partners:
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.985
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 0.983
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.977
PHF5A
PHD finger protein 5A.
   
 0.971
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.967
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.963
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.959
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.959
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
   
 0.956
ENSZALP00000005811
annotation not available
   
 0.955
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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