STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1ADNA cross-link repair 1A. (969 aa)    
Predicted Functional Partners:
XRCC6
X-ray repair cross complementing 6.
   
 0.905
XRCC5
X-ray repair cross complementing 5.
    
 0.905
INTS4
Integrator complex subunit 4.
   
 0.861
FIP1L1
Factor interacting with PAPOLA and CPSF1.
    
 0.856
FANCD2
FA complementation group D2.
   
 0.853
LIG4
DNA ligase 4.
   
 0.847
PCF11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.841
ENSZALP00000017618
annotation not available
  
 0.841
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.838
INTS1
Integrator complex subunit 1.
    
 0.832
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.