Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD40Ankyrin repeat domain 40. (428 aa)    
Predicted Functional Partners:
AHCY
Adenosylhomocysteinase.
    
   0.912
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.853
SEC24B
SEC24 homolog B, COPII coat complex component.
   
 0.818
SEC24A
SEC24 homolog A, COPII coat complex component.
   
 0.818
SEC23A
Sec23 homolog A, coat complex II component.
   
 0.786
SEC23B
SEC23 homolog B, coat complex II component.
   
 0.786
SEC24C
SEC24 homolog C, COPII coat complex component.
   
 0.779
SEC24D
SEC24 homolog D, COPII coat complex component.
   
 0.779
SEC16A
SEC16 homolog A, endoplasmic reticulum export factor.
   
 0.751
SEC16B
SEC16 homolog B, endoplasmic reticulum export factor.
   
 0.751
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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