STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102065141Deubiquitinase DESI2. (196 aa)    
Predicted Functional Partners:
PSMC3
Proteasome 26S subunit, ATPase 3.
   
   0.655
TMBIM6
Transmembrane BAX inhibitor motif containing 6.
    
   0.654
PSMA6
Proteasome 20S subunit alpha 6.
    
   0.654
PSMB1
Proteasome 20S subunit beta 1.
    
   0.654
PSMC1
Proteasome 26S subunit, ATPase 1.
    
   0.654
PSMB3
Proteasome 20S subunit beta 3.
    
   0.654
PSMC5
Proteasome 26S subunit, ATPase 5.
    
   0.654
PSMD11
Proteasome 26S subunit, non-ATPase 11.
    
   0.654
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
    
   0.654
PSMC2
Proteasome 26S subunit, ATPase 2.
    
   0.654
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.