Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTGFRProstaglandin F receptor. (364 aa)    
Predicted Functional Partners:
LOC102071789
Guanine nucleotide-binding protein G(q) subunit alpha.
    
 0.788
GNA11
Guanine nucleotide-binding protein subunit alpha-11.
    
 0.788
PTGES2
Prostaglandin E synthase 2.
      
 0.633
GPR22
G protein-coupled receptor 22.
      
 0.631
GHSR
Growth hormone secretagogue receptor.
      
 0.622
GNB1
G protein subunit beta 1.
    
  0.581
GNB4
G protein subunit beta 4.
    
  0.581
GNB3
G protein subunit beta 3.
    
  0.581
EDNRA
Endothelin receptor type A.
      
 0.570
PTGS2
Prostaglandin-endoperoxide synthase 2.
    
 
 0.566
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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