STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLIP4CAP-Gly domain containing linker protein family member 4. (701 aa)    
Predicted Functional Partners:
CYLD
CYLD lysine 63 deubiquitinase.
    
 0.705
LOC102070981
Ubiquitin carboxyl-terminal hydrolase CYLD.
    
 0.705
MTOR
Mechanistic target of rapamycin kinase.
   
  0.704
MAPRE2
Microtubule associated protein RP/EB family member 2.
    
 
 0.649
MAPRE1
Microtubule associated protein RP/EB family member 1.
    
 
 0.649
RIPK1
Receptor interacting serine/threonine kinase 1.
    
  0.642
LOC102065462
Tumor necrosis factor receptor superfamily member 1A.
    
  0.642
RPS27A
Ribosomal protein S27a.
    
 0.641
BUB3
BUB3 mitotic checkpoint protein.
    
 0.611
XIAP
X-linked inhibitor of apoptosis.
    
  0.591
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.