STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPV4Transient receptor potential cation channel subfamily V member 4. (629 aa)    
Predicted Functional Partners:
TRPM2
Transient receptor potential cation channel subfamily M member 2.
     
 0.794
PRKACB
Protein kinase cAMP-activated catalytic subunit beta.
    
 0.666
CALM2
Calmodulin 2.
    
 
 0.600
CALM1
Calmodulin 1.
    
 
 0.600
CALML3
Calmodulin like 3.
    
 
 0.600
HIF1AN
Hypoxia inducible factor 1 subunit alpha inhibitor.
    
   0.577
YES1
YES proto-oncogene 1, Src family tyrosine kinase.
    
 0.576
SRC
SRC proto-oncogene, non-receptor tyrosine kinase.
    
 0.576
PRKCB
Protein kinase C beta.
    
 0.552
PRKCA
Protein kinase C alpha type.
    
 0.552
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.