STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTHRC1Collagen triple helix repeat containing 1. (237 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.533
PCOLCE2
Procollagen C-endopeptidase enhancer 2.
    
 0.520
C1QC
Complement C1q subcomponent subunit C.
    
  0.481
RPS27A
Ribosomal protein S27a.
    
 0.458
SETDB2
Histone-lysine N-methyltransferase SETDB2.
    
  0.427
ENSZALP00000010849
annotation not available
    
  0.427
TRRAP
Transformation/transcription domain associated protein.
    
  0.418
TAF9
TATA-box binding protein associated factor 9b.
    
  0.418
TAF12
TATA-box binding protein associated factor 12.
    
  0.418
WDR18
WD repeat domain 18.
    
  0.417
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.