STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain 1. (296 aa)    
Predicted Functional Partners:
EHBP1
EH domain binding protein 1.
   
 0.898
PDLIM5
PDZ and LIM domain 5.
 
   
0.842
PTK2
Protein tyrosine kinase 2.
    
 0.834
PDLIM3
PDZ and LIM domain 3.
  
  
 
0.832
SMTN
Smoothelin.
   
 
 0.824
PDLIM7
PDZ and LIM domain 7.
 
   
0.824
LOC102069065
myosin-IIIb.
    
  0.810
MYO3A
Myosin IIIA.
    
  0.810
MYO3B
Myosin IIIB.
    
  0.810
SMTNL2
Smoothelin like 2.
     
 0.784
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.