STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM11PR/SET domain 11. (1184 aa)    
Predicted Functional Partners:
PRDM16
PR/SET domain 16.
    
 
 0.525
SPO11
SPO11 initiator of meiotic double stranded breaks.
     
 0.521
NOXO1
NADPH oxidase organizer 1.
    
 0.507
SH3PXD2A
SH3 and PX domains 2A.
    
 0.507
NCF4
Neutrophil cytosolic factor 4.
    
 0.507
SH3PXD2B
SH3 and PX domains 2B.
    
 0.507
SH3RF3
SH3 domain containing ring finger 3.
    
 0.503
KMT5A
Lysine methyltransferase 5A.
    
 0.502
LOC106629544
Histone-lysine N-methyltransferase SETMAR.
    
 0.489
NOX4
NADPH oxidase 4.
   
 0.480
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.