STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQSEC3IQ motif and Sec7 domain ArfGEF 3. (754 aa)    
Predicted Functional Partners:
GBF1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
     
0.655
ARF6
ADP ribosylation factor 6.
    
 
 0.633
CYTH3
Cytohesin 3.
    
0.606
CYTH4
Cytohesin 4.
    
0.606
CYTH1
Cytohesin 1.
    
0.606
ARFGEF1
ADP ribosylation factor guanine nucleotide exchange factor 1.
     
0.548
PSD
Pleckstrin and Sec7 domain containing.
   
 
0.547
PSD2
Pleckstrin and Sec7 domain containing 2.
   
 
0.547
PSD3
Pleckstrin and Sec7 domain containing 3.
   
 
0.541
ARL15
ADP ribosylation factor like GTPase 15.
    
 
 0.533
Your Current Organism:
Zonotrichia albicollis
NCBI taxonomy Id: 44394
Other names: Z. albicollis, white-throated sparrow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.