STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0042TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pas:Pars_0045 cytidine deaminase. (131 aa)    
Predicted Functional Partners:
Tneu_1651
TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: pis:Pisl_0469 uridine phosphorylase.
  
 
 0.973
tdk
PFAM: thymidine kinase; KEGG: pas:Pars_1427 thymidine kinase.
    
 0.941
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.909
surE-2
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.909
Tneu_1433
TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: pis:Pisl_0895 glycyl-tRNA synthetase.
  
    0.829
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.829
Tneu_0603
PFAM: purine or other phosphorylase family 1; KEGG: pis:Pisl_1572 purine and other phosphorylases, family 1.
  
  
 0.749
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.604
Tneu_0043
KEGG: pis:Pisl_1088 hypothetical protein.
       0.566
Tneu_0044
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pis:Pisl_1089 short-chain dehydrogenase/reductase SDR.
  
  
 0.531
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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