Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tneu_0318KEGG: pis:Pisl_1357 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Tneu_0319
paREP6; KEGG: pis:Pisl_1356 paREP6.
       0.825
Tneu_0317
paREP6; KEGG: pis:Pisl_1358 paREP6.
       0.787
Tneu_0320
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pis:Pisl_1355 putative alpha-isopropylmalate/homocitrate synthase family transferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.773
Tneu_0321
KEGG: pis:Pisl_1353 cytochrome oxidase,subunit I.
       0.693
Tneu_0322
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pis:Pisl_1352 cytochrome bd ubiquinol oxidase, subunit I.
       0.693
Tneu_0316
PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: pcl:Pcal_1262 protein of unknown function DUF6, transmembrane.
       0.404
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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