STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0389PFAM: transport system permease protein; KEGG: pis:Pisl_0215 transport system permease protein. (338 aa)    
Predicted Functional Partners:
Tneu_0390
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_0214 ABC transporter related.
 
 
 0.992
Tneu_0388
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0216 periplasmic binding protein.
 
 
 0.980
Tneu_0371
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_0233 ABC transporter related.
 
 
 0.964
Tneu_0978
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0059 periplasmic binding protein.
 
 
 0.959
Tneu_0377
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0227 periplasmic binding protein.
 
 
 0.948
Tneu_0373
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0231 periplasmic binding protein.
 
 
 0.939
Tneu_1819
PFAM: SMC domain protein; KEGG: pis:Pisl_0302 SMC domain protein.
  
 
 0.916
Tneu_0127
KEGG: pis:Pisl_1171 hypothetical protein.
  
 
 0.828
Tneu_0387
PFAM: protein of unknown function DUF364; KEGG: pis:Pisl_0217 protein of unknown function DUF364.
 
    0.767
Tneu_1092
PFAM: transport system permease protein; KEGG: pis:Pisl_1955 transport system permease protein.
 
    
0.721
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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