STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0491PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pis:Pisl_1490 NAD-dependent epimerase/dehydratase. (411 aa)    
Predicted Functional Partners:
Tneu_1274
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pis:Pisl_1846 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.953
Tneu_0489
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pas:Pars_2113 NAD-dependent epimerase/dehydratase.
 
 
0.892
Tneu_0492
PFAM: Nucleotidyl transferase; KEGG: pis:Pisl_1489 nucleotidyl transferase.
     
 0.803
Tneu_0488
PFAM: glycosyl transferase family 2; KEGG: rci:RCIX1947 putative glycosyltransferase (family 2).
 
  
 0.776
Tneu_0485
PFAM: glycosyl transferase group 1; KEGG: tpe:Tpen_1724 glycosyl transferase, group 1.
 
  
 0.760
Tneu_0486
PFAM: glycosyl transferase group 1; KEGG: tpe:Tpen_1725 glycosyl transferase, group 1.
 
  
 0.755
Tneu_0487
Hypothetical protein.
     
 0.689
Tneu_0490
KEGG: pis:Pisl_1493 hypothetical protein.
       0.687
Tneu_0484
PFAM: glycosyl transferase family 2; KEGG: msm:MSMEG_1826 dTDP-RhA:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase.
 
   
 0.681
Tneu_0786
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pis:Pisl_1772 NAD-dependent epimerase/dehydratase.
 
 
0.678
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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