STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0662PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pai:PAE1589 3-oxoacyl-(acyl carrier protein) reductase. (224 aa)    
Predicted Functional Partners:
folE
PFAM: GTP cyclohydrolase I; KEGG: pis:Pisl_1636 GTP cyclohydrolase I.
  
 
 0.860
Tneu_0657
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pas:Pars_0647 NADH dehydrogenase subunit I.
   
 
 0.823
Tneu_0659
NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: pai:PAE1582 NADH dehydrogenase subunit D.
  
 
 0.821
Tneu_0056
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pis:Pisl_1102 serine/threonine protein kinase.
  
 0.818
Tneu_0658
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pcl:Pcal_0515 respiratory-chain NADH dehydrogenase, subunit 1.
  
 
 0.813
Tneu_0652
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pis:Pisl_1627 NADH/ubiquinone/plastoquinone (complex I).
  
 
 0.812
Tneu_1820
PFAM: metallophosphoesterase; KEGG: pis:Pisl_0301 metallophosphoesterase.
  
 
 0.782
Tneu_0660
Conserved hypothetical protein; KEGG: pai:PAE1584 conserved within P.aerophilum.
  
 
 0.724
Tneu_1788
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: pis:Pisl_0335 NADH dehydrogenase (ubiquinone), 30 kDa subunit.
   
 
 0.721
Tneu_1339
KEGG: pis:Pisl_0946 hypothetical protein.
  
 
 0.716
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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