STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0741PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pis:Pisl_1723 protein synthesis factor, GTP-binding. (519 aa)    
Predicted Functional Partners:
rps6e
PFAM: Ribosomal protein S6e; KEGG: pai:PAE1505 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
 
 0.975
Tneu_1687
PFAM: RNA binding S1 domain protein; translation initiation factor 2, alpha subunit; KEGG: pis:Pisl_0433 translation initiation factor IF-2 subunit alpha.
   
 0.973
rps3
Ribosomal protein S3- domain protein; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.970
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
 0.965
eif1a
S1 IF1 family protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
 
 0.964
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 0.963
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: pis:Pisl_0771 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
 
  0.963
rps9
PFAM: ribosomal protein S9; KEGG: pis:Pisl_0694 30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
  
 0.963
rps2
PFAM: ribosomal protein S2; KEGG: pas:Pars_0061 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.962
rps4e
PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG: pis:Pisl_0560 30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.962
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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