STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0759PFAM: aminotransferase class-III; KEGG: pis:Pisl_1743 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (446 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.918
Tneu_0315
PFAM: Protein of unknown function DUF137; KEGG: pis:Pisl_1361 protein of unknown function DUF137.
     
  0.900
Tneu_0421
PFAM: Aldehyde Dehydrogenase_; KEGG: pis:Pisl_0249 succinate-semialdehyde dehydrogenase (NAD(P)(+)).
 
 
 0.769
Tneu_1265
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pis:Pisl_1857 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
  
 0.653
Tneu_1096
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pis:Pisl_1949 alcohol dehydrogenase GroES domain protein.
 
 
 0.575
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.574
Tneu_1466
PFAM: aminotransferase class I and II; KEGG: pis:Pisl_1028 putative transcriptional regulator, GntR family.
 
  
 0.570
Tneu_1431
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pis:Pisl_0897 putative agmatinase; Belongs to the arginase family.
 
  
 0.562
Tneu_0835
Alanine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: pcl:Pcal_1612 serine--glyoxylate transaminase.
  
 
 0.556
Tneu_1557
PFAM: aminotransferase class V; KEGG: pas:Pars_1737 aminotransferase, class V.
  
 
 0.556
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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