STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0783PFAM: NUDIX hydrolase; KEGG: pis:Pisl_1768 NUDIX hydrolase. (139 aa)    
Predicted Functional Partners:
Tneu_0785
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pis:Pisl_1770 alcohol dehydrogenase GroES domain protein.
       0.564
Tneu_0784
PFAM: PhoH family protein; KH type 2 domain protein; KEGG: pas:Pars_2115 PhoH family protein.
       0.559
Tneu_2001
TIGRFAM: MoaD family protein; PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein; KEGG: pis:Pisl_0649 MoaD family protein.
       0.558
Tneu_0431
HhH-GPD family protein; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: ape:APE_0875.1 U/G and T/G mismatch-specific DNA glycosylase.
  
  
 0.552
Tneu_0491
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pis:Pisl_1490 NAD-dependent epimerase/dehydratase.
  
  
 0.506
Tneu_1865
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pis:Pisl_1398 phosphoesterase, DHHA1.
  
  
 0.497
Tneu_1590
PFAM: dihydroorotate dehydrogenase; KEGG: pis:Pisl_0507 dihydroorotate dehydrogenase.
  
  
 0.490
Tneu_1077
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; ATP-NAD/AcoX kinase; KEGG: pis:Pisl_1971 ATP-NAD/AcoX kinase.
  
  
 0.441
Tneu_1738
PFAM: Quinolinate phosphoribosyl transferase; KEGG: pis:Pisl_0389 nicotinate phosphoribosyltransferase.
     
 0.435
Tneu_1593
PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; KEGG: pis:Pisl_0510 xylose isomerase domain protein TIM barrel.
     
 0.431
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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