STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_0839KEGG: pai:PAE3458 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Tneu_0838
KEGG: pis:Pisl_0984 molybdopterin-guanine dinucleotide biosynthesis protein A.
       0.773
Tneu_0840
KEGG: pas:Pars_1862 hypothetical protein.
       0.715
htpX
PFAM: peptidase M48 Ste24p; KEGG: pis:Pisl_0989 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
       0.652
Tneu_0837
Conserved hypothetical protein; KEGG: pai:PAE3452 conserved within P.aerophilum.
       0.548
Tneu_0834
PFAM: HEPN domain protein; KEGG: pas:Pars_1869 HEPN domain protein.
       0.531
Tneu_0835
Alanine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: pcl:Pcal_1612 serine--glyoxylate transaminase.
       0.531
Tneu_0836
KEGG: pis:Pisl_0982 hypothetical protein.
       0.531
Tneu_0842
KEGG: pis:Pisl_0990 hypothetical protein.
       0.461
Tneu_0843
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pcl:Pcal_1190 molybdenum cofactor synthesis domain.
       0.461
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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