Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tneu_0976PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_0057 ABC transporter related. (225 aa)    
Predicted Functional Partners:
Tneu_0977
KEGG: pis:Pisl_0058 sulfate ABC transporter, permease protein, putative.
    
  0.963
Tneu_0978
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0059 periplasmic binding protein.
    
 0.915
Tneu_1091
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_1956 ABC transporter related.
  
     0.624
Tneu_1325
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pcl:Pcal_0683 ABC transporter related.
  
     0.536
rpl2
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
     0.450
Tneu_0979
modD protein; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
       0.450
Tneu_1033
KEGG: pis:Pisl_2014 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.407
Tneu_1866
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_1399 ABC transporter related.
  
     0.400
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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