STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1063KEGG: pis:Pisl_1987 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Tneu_1055
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_1995 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
    
  0.954
Tneu_1056
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pis:Pisl_1994 molybdopterin oxidoreductase.
    
 0.952
Tneu_0355
KEGG: pis:Pisl_0160 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit).
     
  0.900
ppcA
Phosphoenolpyruvate carboxylase; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family.
     
  0.800
Tneu_1334
KEGG: pis:Pisl_0951 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region.
     
  0.800
Tneu_1335
KEGG: pis:Pisl_0950 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region.
     
  0.800
Tneu_1509
PFAM: Lactate/malate dehydrogenase; KEGG: pai:PAE2370 malate dehydrogenase; Belongs to the LDH/MDH superfamily.
     
  0.800
Tneu_1062
PFAM: molydopterin dinucleotide-binding region; KEGG: pis:Pisl_1988 molydopterin dinucleotide-binding region.
     
 0.778
Tneu_1064
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_1986 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.778
Tneu_1060
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_1990 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.773
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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