STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1147KEGG: pai:PAE0116 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Tneu_1146
Hypothetical protein.
       0.773
Tneu_1148
KEGG: pai:PAE0115 hypothetical protein.
       0.604
Tneu_1150
KEGG: pai:PAE0112 hypothetical protein.
       0.604
Tneu_1149
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: pai:PAE0114 hypothetical protein.
       0.595
Tneu_1151
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: pai:PAE0111 hypothetical protein.
       0.590
Tneu_1152
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: pai:PAE0109 hypothetical protein.
       0.569
Tneu_1153
KEGG: pai:PAE0108 hypothetical protein.
       0.561
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.