STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1414PFAM: Radical SAM domain protein; KEGG: pis:Pisl_0768 radical SAM domain protein. (290 aa)    
Predicted Functional Partners:
Tneu_0689
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pis:Pisl_1662 transcriptional regulator, XRE family.
  
     0.663
Tneu_1415
KEGG: pis:Pisl_0767 hypothetical protein.
       0.651
Tneu_0699
PFAM: NMD3 family protein; KEGG: pai:PAE1653 hypothetical protein.
  
     0.636
Tneu_0717
PFAM: peptidase M50; KEGG: pis:Pisl_1696 peptidase M50.
       0.595
Tneu_1413
KEGG: pis:Pisl_0769 hypothetical protein.
       0.563
Tneu_1989
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pas:Pars_2352 radical SAM domain protein.
  
     0.553
Tneu_0827
Phosphoadenosine phosphosulfate reductase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; phosphoadenosine phosphosulfate reductase; KEGG: pas:Pars_2060 hypothetical protein.
  
     0.514
Tneu_0315
PFAM: Protein of unknown function DUF137; KEGG: pis:Pisl_1361 protein of unknown function DUF137.
  
     0.511
Tneu_1276
PFAM: TatD-related deoxyribonuclease; KEGG: pis:Pisl_1844 TatD-related deoxyribonuclease.
  
     0.510
Tneu_0687
PFAM: Protein of unknown function DUF373; KEGG: pis:Pisl_1660 protein of unknown function DUF373.
 
     0.501
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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