STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1445PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: pas:Pars_1810 transcriptional regulator, TrmB. (239 aa)    
Predicted Functional Partners:
Tneu_1446
PFAM: Radical SAM domain protein; KEGG: pis:Pisl_1009 radical SAM domain protein.
       0.671
Tneu_1384
KEGG: pis:Pisl_0839 hypothetical protein.
  
   
 0.582
Tneu_1950
KEGG: pis:Pisl_0716 hypothetical protein.
  
     0.577
Tneu_0354
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_0161 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.531
Tneu_1055
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_1995 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.531
Tneu_1064
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_1986 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.531
Tneu_1848
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_0265 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.531
Tneu_1287
Phosphate uptake regulator, PhoU; PFAM: SpoVT/AbrB domain protein; PhoU family protein; KEGG: pis:Pisl_1831 phosphate uptake regulator, PhoU.
  
     0.508
Tneu_1047
PFAM: protein of unknown function DUF343; KEGG: pis:Pisl_2004 protein of unknown function DUF343.
  
     0.500
Tneu_1931
PFAM: Protein of unknown function DUF371; KEGG: pcl:Pcal_2061 protein of unknown function DUF371.
  
     0.433
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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