STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1620PFAM: heat shock protein Hsp20; KEGG: pis:Pisl_0537 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. (175 aa)    
Predicted Functional Partners:
Tneu_1619
KEGG: pis:Pisl_0536 AAA family ATPase, CDC48 subfamily; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.846
Tneu_1983
KEGG: pas:Pars_2346 AAA family ATPase, CDC48 subfamily; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.597
Tneu_1618
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: pis:Pisl_0535 CBS domain containing membrane protein.
  
    0.591
Tneu_1617
KEGG: pis:Pisl_0534 hypothetical protein.
       0.498
Tneu_1616
PFAM: GTP-binding protein HSR1-related; TGS domain protein; GTPase of unknown function domain protein; KEGG: pis:Pisl_0533 translation-associated GTPase.
 
     0.479
gap
Glyceraldehyde-3-phosphate dehydrogenase, type II; KEGG: pis:Pisl_1710 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase.
 
 
 0.453
Tneu_0713
KEGG: pai:PAE1689 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase.
 
  
 0.424
Tneu_0001
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
  
 
   0.416
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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