STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1866PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_1399 ABC transporter related. (226 aa)    
Predicted Functional Partners:
Tneu_0937
PFAM: protein of unknown function DUF214; KEGG: pis:Pisl_0025 protein of unknown function DUF214.
 
 
 0.920
Tneu_1449
PFAM: protein of unknown function DUF214; KEGG: pis:Pisl_1012 protein of unknown function DUF214.
 
 
 0.919
Tneu_1012
PFAM: protein of unknown function DUF214; KEGG: pis:Pisl_0080 protein of unknown function DUF214.
 
 
 0.910
Tneu_1865
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pis:Pisl_1398 phosphoesterase, DHHA1.
  
    0.605
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
 
   
 0.543
rpl14
Ribosomal protein L14b/L23e; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
 
     0.513
hisS
KEGG: pis:Pisl_1621 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
   
 0.506
Tneu_0723
PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pai:PAE1725 thioredoxin reductase (TrxB).
 
  
 0.505
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
 
 
 
 0.489
Tneu_0978
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0059 periplasmic binding protein.
  
  
 0.474
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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