STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tneu_1955PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pis:Pisl_0711 radical SAM domain protein. (531 aa)    
Predicted Functional Partners:
Tneu_1954
KEGG: pis:Pisl_0712 hypothetical protein.
       0.589
Tneu_0846
KEGG: pis:Pisl_0994 hypothetical protein.
  
     0.578
Tneu_1047
PFAM: protein of unknown function DUF343; KEGG: pis:Pisl_2004 protein of unknown function DUF343.
  
     0.529
Tneu_0433
PFAM: ATPase; KEGG: pis:Pisl_0150 ATPase.
  
     0.520
Tneu_0627
KEGG: pai:PAE1519 hypothetical protein.
 
  
 0.519
Tneu_0191
KEGG: pis:Pisl_1257 hypothetical protein.
  
     0.518
Tneu_0595
PFAM: Protein of unknown function DUF1512; KEGG: pis:Pisl_1565 protein of unknown function DUF1512.
  
     0.414
nop10
RNA-binding protein Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.
  
     0.408
Your Current Organism:
Pyrobaculum neutrophilum
NCBI taxonomy Id: 444157
Other names: P. neutrophilum V24Sta, Pyrobaculum neutrophilum JCM 9278, Pyrobaculum neutrophilum V24Sta, Pyrobaculum neutrophilum str. V24Sta, Pyrobaculum neutrophilum strain V24Sta, Thermoproteus neutrophilus V24Sta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.