STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX01602.1TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; KEGG: mvn:Mevan_1170 daunorubicin resistance ABC transporter, inner membrane subunit B. (253 aa)    
Predicted Functional Partners:
ABX01600.1
KEGG: mvn:Mevan_1172 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.992
ABX01601.1
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mvn:Mevan_1171 MATE efflux family protein.
  
  
 0.933
ABX01599.1
PFAM: transcriptional regulator PadR family protein; KEGG: mvn:Mevan_1173 transcriptional regulator, PadR-like family.
 
  
 0.880
ABX02414.1
TIGRFAM: methanogenesis marker protein 1; PFAM: protein of unknown function DUF181; KEGG: mvn:Mevan_0379 protein of unknown function DUF181.
  
  
 0.818
ABX01303.1
PFAM: nitroreductase; KEGG: cbe:Cbei_3083 nitroreductase.
  
  
 0.756
ABX01654.1
PFAM: nitroreductase; KEGG: mvn:Mevan_1120 nitroreductase.
  
  
 0.756
cbiX
Sirohydrochlorin cobaltochelatase; Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the insertion of Ni(2+) into sirohydrochlorin to yield Ni- sirohydrochlorin.
       0.551
ABX01598.1
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: mvn:Mevan_1174 peptidase M50.
       0.542
rad50
SMC domain protein; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.
     
 0.537
ABX01596.1
PFAM: conserved hypothetical protein; KEGG: mvn:Mevan_1176 conserved hypothetical protein 245.
     
 0.529
Your Current Organism:
Methanococcus maripaludis C6
NCBI taxonomy Id: 444158
Other names: M. maripaludis C6, Methanococcus maripaludis str. C6, Methanococcus maripaludis strain C6
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