STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: mvn:Mevan_1156 LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (47 aa)    
Predicted Functional Partners:
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
 
 0.999
rps17e
KEGG: mvn:Mevan_1450 30S ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.999
rps24e
PFAM: Ribosomal protein S24e; KEGG: mvn:Mevan_1428 ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.999
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mvn:Mevan_1105 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.999
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.999
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
rpl32e
PFAM: Ribosomal protein L32e; KEGG: mvn:Mevan_0727 ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.999
rps4e
PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG: mvn:Mevan_0722 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 0.999
Your Current Organism:
Methanococcus maripaludis C6
NCBI taxonomy Id: 444158
Other names: M. maripaludis C6, Methanococcus maripaludis str. C6, Methanococcus maripaludis strain C6
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