STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspAPutative signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (193 aa)    
Predicted Functional Partners:
ABS30514.1
tRNA nucleotidyltransferase; Predicted based on similarity to Pfam PF01743 and related proteins in nr [COG0617; J]; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.749
ABS30584.1
Hypothetical protein SMGWSS_184.
  
     0.748
lepB
Signal peptidase I; Predicted based on similarity to TIGRFAM equivalog TIGR02227 [COG0681; U]; Belongs to the peptidase S26 family.
 
   
 0.711
ABS30654.1
Hypothetical protein SMGWSS_258.
  
     0.699
rpsU
30S ribosomal subunit protein S21; Predicted based on similarity to TIGRFAM equivalog TIGR00030 [COG0828; J]; Belongs to the bacterial ribosomal protein bS21 family.
 
     0.681
rpmF
50S ribosomal subunit protein L32; Predicted based on similarity to TIGRFAM equivalog TIGR01031 [COG0333; J]; Belongs to the bacterial ribosomal protein bL32 family.
 
    0.679
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
 
     0.678
ABS30522.1
Putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion; Predicted based on similarity to TIGRFAM TIGR00594 and TIGR01406, Pfam PF00929, and related proteins in nr [COG0587, COG0847; L].
 
    0.665
rluD
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.557
trmH
Putative tRNA:rRNA methyltransferase; Predicted based on similarity to Pfam PF08032, PF00588 and related proteins in nr [COG0566; J].
 
     0.546
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.