STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (433 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase beta subunit; Predicted based on similarity to Pfam PF03483, PF03484 and related proteins in nr [COG0072; J]; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.973
leuS
leucyl-tRNA synthetase; Predicted based on similarity to related proteins in nr [COG0495; J]; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.804
serS
seryl-tRNA synthetase; Predicted based on similarity to TIGRFAM equivalog TIGR00414 [COG0172; J].
  
  
 0.737
pheS
phenylalanyl-tRNA synthetase alpha subunit; Predicted based on similarity to related proteins in nr [COG0016; J]; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
  
  
 0.709
ABS30522.1
Putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion; Predicted based on similarity to TIGRFAM TIGR00594 and TIGR01406, Pfam PF00929, and related proteins in nr [COG0587, COG0847; L].
   
  
 0.684
glnS
glutaminyl-tRNA synthetase; Predicted based on similarity to TIGRFAM equivalog TIGR00440 [COG0008; J].
  
  
 0.640
prfA
Peptide chain release factor 1; Predicted based on similarity to Pfam PF03462, PF00472 and related proteins in nr [COG0216; J].
  
  
 0.595
rplT
50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
    0.588
argH
Argininosuccinate lyase; Predicted based on similarity to Pfam PF00206 and related proteins in nr [COG0165; E].
  
    0.574
ABS30473.1
Hypothetical protein SMGWSS_044.
       0.555
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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