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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmB50S ribosomal subunit protein L28; Predicted based on similarity to TIGRFAM equivalog TIGR00009 [COG0227; J]; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)    
Predicted Functional Partners:
rpmG
50S ribosomal subunit protein L33; Predicted based on similarity to TIGRFAM equivalog TIGR01023 [COG0267; J]; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.998
rpmF
50S ribosomal subunit protein L32; Predicted based on similarity to TIGRFAM equivalog TIGR01031 [COG0333; J]; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.995
rpsR
30S ribosomal subunit protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.994
rpsN
30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.994
rpmE
50S ribosomal subunit protein L31; Predicted based on similarity to Pfam PF01197 and related proteins in nr [COG0254; J]; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.993
rpsD
30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.993
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.992
rplS
50S ribosomal subunit protein L19; Predicted based on similarity to Pfam PF01245 [COG0335; J].
  
 
 0.992
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.992
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.992
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.