STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS30480.1Hypothetical protein SMGWSS_052. (40 aa)    
Predicted Functional Partners:
korB
2-oxoglutarate ferredoxin oxidoreductase beta subunit; Predicted based on similarity to related proteins in nr [COG1013; C].
       0.773
serS
seryl-tRNA synthetase; Predicted based on similarity to TIGRFAM equivalog TIGR00414 [COG0172; J].
       0.773
rpmB
50S ribosomal subunit protein L28; Predicted based on similarity to TIGRFAM equivalog TIGR00009 [COG0227; J]; Belongs to the bacterial ribosomal protein bL28 family.
       0.773
rpmG
50S ribosomal subunit protein L33; Predicted based on similarity to TIGRFAM equivalog TIGR01023 [COG0267; J]; Belongs to the bacterial ribosomal protein bL33 family.
       0.773
leuS
leucyl-tRNA synthetase; Predicted based on similarity to related proteins in nr [COG0495; J]; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.473
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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