STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplS50S ribosomal subunit protein L19; Predicted based on similarity to Pfam PF01245 [COG0335; J]. (95 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal subunit protein S16; Predicted based on similarity to TIGRFAM equivalog PF00886 [COG0228; J]; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.995
rpmF
50S ribosomal subunit protein L32; Predicted based on similarity to TIGRFAM equivalog TIGR01031 [COG0333; J]; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.995
rpmE
50S ribosomal subunit protein L31; Predicted based on similarity to Pfam PF01197 and related proteins in nr [COG0254; J]; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.995
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.994
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.993
rpmB
50S ribosomal subunit protein L28; Predicted based on similarity to TIGRFAM equivalog TIGR00009 [COG0227; J]; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.992
rplA
50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
 
 0.992
rplK
50S ribosomal subunit protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.992
rpsB
30S ribosomal subunit protein S2; Predicted based on similarity to Pfam PF00318 [COG0052; J]; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.992
rpsI
30S ribosomal subunit protein S9; Predicted based on similarity to Pfam PF00380 [COG0103; J]; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.992
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.