STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDPutative FeS assembly protein SufD; Predicted based on similarity to Pfam PF01458 and related proteins in nr [COG0719; O]. (433 aa)    
Predicted Functional Partners:
sufC
Putative FeS assembly ATPase SufC; Predicted based on similarity to COG COG0396 and related proteins in nr [COG0396; O].
 
 
 0.997
sufS
Cysteine desulphurase, SufS; Predicted based on similarity to Pfam PF00266 and related proteins in nr [COG0520; E]; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.962
sufB
FeS assembly protein SufB; Predicted based on similarity to COG COG0719, Pfam PF01458, and related proteins in nr [COG0719; O].
 
   
0.895
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
     
 0.870
sufE
Cysteine desulfurase SufE subunit; Predicted based on similarity to Pfam PF02657 and related proteins in nr [COG2166; R].
  
   0.728
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
     
 0.530
ABS30589.1
Protein containing DUF59; Predicted based on similarity to Pfam PF01883 and related proteins in nr.
     
 0.488
ABS30554.1
Conserved hypothetical protein SMGWSS_146; Predicted based on similarity to related proteins in nr.
  
     0.410
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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