STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pheAPutative prephenate dehydratase; Predicted based on similarity to Pfam PF00800 and related proteins in nr [COG0077; E]. (273 aa)    
Predicted Functional Partners:
ABS30599.1
Putative phospho-2-dehydro-3-deoxyheptonate aldolase (aroG)/chorismate mutase (pheA); Predicted based on similarity to Pfam PF00793, PF01817 and related proteins in nr [COG2876, COG1605; E].
 
 
 0.999
aspC
Putative aspartate aminotransferase; Predicted based on similarity to Pfam PF00155 and related proteins in nr [COG0436; E].
 
 
 0.995
trpF
Putative tryptophan synthase, beta subunit (trpB)/anthranilate isomerase activity of trpC (trpF); The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpF family.
  
  
 0.906
thrA
Aspartokinase/homoserine dehydrogenase; Predicted based on similarity to Pfam PF00742, PF03447 and related proteins in nr [COG0527; E].
 
   
 0.849
asd
Aspartate semialdehyde dehydrogenase; Predicted based on similarity to TIGRFAM equivalog TIGR01296 [COG0136; E]; Belongs to the aspartate-semialdehyde dehydrogenase family.
     
 0.820
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
 
  
 0.801
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
     
 0.706
trpG
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
  
 0.631
aroE
Putative shikimate 5-dehydrogenase; Predicted based on similarity to Pfam PF08501, PF01488 and related proteins in nr [COG0169; E].
 
   
 0.597
trpC
Indole-3-glycerol phosphate synthase activity of trpC; Predicted based on similarity to Pfam PF00218 and related proteins in nr [COG0134; E]; Belongs to the TrpC family.
  
  
 0.564
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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