STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsK30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa)    
Predicted Functional Partners:
rpsA
Putative ribosomal protein S1; Predicted based on similarity to TIGRFAM equivalog TIGR00717 and related proteins in nr [COG0539; J].
   
 0.999
rpsB
30S ribosomal subunit protein S2; Predicted based on similarity to Pfam PF00318 [COG0052; J]; Belongs to the universal ribosomal protein uS2 family.
  
 0.999
rpsI
30S ribosomal subunit protein S9; Predicted based on similarity to Pfam PF00380 [COG0103; J]; Belongs to the universal ribosomal protein uS9 family.
 
 0.999
rpsF
30S ribosomal subunit protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 0.999
rpsP
30S ribosomal subunit protein S16; Predicted based on similarity to TIGRFAM equivalog PF00886 [COG0228; J]; Belongs to the bacterial ribosomal protein bS16 family.
  
 0.999
rpsO
30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 0.999
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 0.999
rpsG
30S ribosomal subunit protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
 
 0.999
rpsJ
30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.999
rplD
50S ribosomal subunit protein L4; Predicted based on similarity to Pfam PF00573 and related proteins in nr [COG0088; J].
  
 0.999
Your Current Organism:
Sulcia muelleri GWSS
NCBI taxonomy Id: 444179
Other names: C. Sulcia muelleri GWSS, Candidatus Sulcia muelleri GWSS, Candidatus Sulcia muelleri str. GWSS, Candidatus Sulcia muelleri strain GWSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.